GPU Support
Starting with v0.14, Flux doesn't force a specific GPU backend and the corresponding package dependencies on the users. Thanks to the package extension mechanism introduced in julia v1.9, Flux conditionally loads GPU specific code once a GPU package is made available (e.g. through using CUDA
).
NVIDIA GPU support requires the packages CUDA.jl
and cuDNN.jl
to be installed in the environment. In the julia REPL, type ] add CUDA, cuDNN
to install them. For more details see the CUDA.jl readme.
AMD GPU support is available since Julia 1.9 on systems with ROCm and MIOpen installed. For more details refer to the AMDGPU.jl repository.
Metal GPU acceleration is available on Apple Silicon hardware. For more details refer to the Metal.jl repository. Metal support in Flux is experimental and many features are not yet available.
In order to trigger GPU support in Flux, you need to call using CUDA
, using AMDGPU
or using Metal
in your code. Notice that for CUDA, explicitly loading also cuDNN
is not required, but the package has to be installed in the environment.
Old versions of Flux automatically installed CUDA.jl to provide GPU support. Starting from Flux v0.14, CUDA.jl is not a dependency anymore and has to be installed manually.
Basic GPU Usage
Support for array operations on other hardware backends, like GPUs, is provided by external packages like CUDA.jl, AMDGPU.jl, and Metal.jl. Flux is agnostic to array types, so we simply need to move model weights and data to the GPU and Flux will handle it.
For example, we can use CUDA.CuArray
(with the CUDA.cu
converter) to run our basic example on an NVIDIA GPU.
(Note that you need to have CUDA available to use CUDA.CuArray – please see the CUDA.jl instructions for more details.)
using CUDA
W = cu(rand(2, 5)) # a 2×5 CuArray
b = cu(rand(2))
predict(x) = W*x .+ b
loss(x, y) = sum((predict(x) .- y).^2)
x, y = cu(rand(5)), cu(rand(2)) # Dummy data
loss(x, y) # ~ 3
Note that we convert both the parameters (W
, b
) and the data set (x
, y
) to cuda arrays. Taking derivatives and training works exactly as before.
If you define a structured model, like a Dense
layer or Chain
, you just need to convert the internal parameters. Flux provides fmap
, which allows you to alter all parameters of a model at once.
d = Dense(10 => 5, σ)
d = fmap(cu, d)
d.weight # CuArray
d(cu(rand(10))) # CuArray output
m = Chain(Dense(10 => 5, σ), Dense(5 => 2), softmax)
m = fmap(cu, m)
m(cu(rand(10)))
As a convenience, Flux provides the gpu
function to convert models and data to the GPU if one is available. By default, it'll do nothing. So, you can safely call gpu
on some data or model (as shown below), and the code will not error, regardless of whether the GPU is available or not. If a GPU library (e.g. CUDA) loads successfully, gpu
will move data from the CPU to the GPU. As is shown below, this will change the type of something like a regular array to a CuArray
.
julia> using Flux, CUDA
julia> m = Dense(10, 5) |> gpu
Dense(10 => 5) # 55 parameters
julia> x = rand(10) |> gpu
10-element CuArray{Float32, 1, CUDA.Mem.DeviceBuffer}:
0.066846445
⋮
0.76706964
julia> m(x)
5-element CuArray{Float32, 1, CUDA.Mem.DeviceBuffer}:
-0.99992573
⋮
-0.547261
The analogue cpu
is also available for moving models and data back off of the GPU.
julia> x = rand(10) |> gpu
10-element CuArray{Float32, 1, CUDA.Mem.DeviceBuffer}:
0.8019236
⋮
0.7766742
julia> x |> cpu
10-element Vector{Float32}:
0.8019236
⋮
0.7766742
Using device objects
In Flux, you can create device
objects which can be used to easily transfer models and data to GPUs (and defaulting to using the CPU if no GPU backend is available). These features are provided by MLDataDevices.jl package, that Flux uses internally and re-exports.
Device objects can be automatically created using the cpu_device
and gpu_device
functions. For instance, the gpu
and cpu
functions are just convenience functions defined as
cpu(x) = cpu_device()(x)
gpu(x) = gpu_device()(x)
gpu_device
performs automatic GPU device selection and returns a device object:
- If no GPU is available, it returns a
CPUDevice
object. - If a LocalPreferences file is present, then the backend specified in the file is used. To set a backend, use
Flux.gpu_backend!(<backend_name>)
. If the trigger package corresponding to the device is not loaded (e.g. withusing CUDA
), then a warning is displayed. - If no LocalPreferences option is present, then the first working GPU with loaded trigger package is used.
Consider the following example, where we load the CUDA.jl package to use an NVIDIA GPU ("CUDA"
is the default preference):
julia> using Flux, CUDA;
julia> device = gpu_device() # returns handle to an NVIDIA GPU if available
(::CUDADevice{Nothing}) (generic function with 4 methods)
julia> model = Dense(2 => 3);
julia> model.weight # the model initially lives in CPU memory
3×2 Matrix{Float32}:
-0.984794 -0.904345
0.720379 -0.486398
0.851011 -0.586942
julia> model = model |> device # transfer model to the GPU
Dense(2 => 3) # 9 parameters
julia> model.weight
3×2 CuArray{Float32, 2, CUDA.Mem.DeviceBuffer}:
-0.984794 -0.904345
0.720379 -0.486398
0.851011 -0.586942
Transferring Training Data
In order to train the model using the GPU both model and the training data have to be transferred to GPU memory. Moving the data can be done in two different ways:
Iterating over the batches in a
DataLoader
object transferring each one of the training batches at a time to the GPU. This is recommended for large datasets. Done by hand, it might look like this:train_loader = Flux.DataLoader((X, Y), batchsize=64, shuffle=true) # ... model definition, optimiser setup for epoch in 1:epochs for (x_cpu, y_cpu) in train_loader x = gpu(x_cpu) y = gpu(y_cpu) grads = gradient(m -> loss(m, x, y), model) Flux.update!(opt_state, model, grads[1]) end end
Rather than write this out every time, you can just call
gpu(::DataLoader)
:gpu_train_loader = Flux.DataLoader((X, Y), batchsize=64, shuffle=true) |> gpu # ... model definition, optimiser setup for epoch in 1:epochs for (x, y) in gpu_train_loader grads = gradient(m -> loss(m, x, y), model) Flux.update!(opt_state, model, grads[1]) end end
This is equivalent to
DataLoader(MLUtils.mapobs(gpu, (X, Y)); keywords...)
. Something similar can also be done withCUDA.CuIterator
,gpu_train_loader = CUDA.CuIterator(train_loader)
. However, this only works with a limited number of data types:first(train_loader)
should be a tuple (orNamedTuple
) of arrays.Transferring all training data to the GPU at once before creating the
DataLoader
. This is usually performed for smaller datasets which are sure to fit in the available GPU memory.gpu_train_loader = Flux.DataLoader((X, Y) |> gpu, batchsize = 32) # ... for epoch in 1:epochs for (x, y) in gpu_train_loader # ...
Here
(X, Y) |> gpu
appliesgpu
to both arrays, as it recurses into structures.
Saving GPU-Trained Models
After the training process is done, one must always transfer the trained model back to the cpu
memory scope before serializing or saving to disk. This can be done, as described in the previous section, with:
model = cpu(model) # or model = model |> cpu
and then
using BSON
# ...
BSON.@save "./path/to/trained_model.bson" model
# in this approach the cpu-transferred model (referenced by the variable `model`)
# only exists inside the `let` statement
let model = cpu(model)
# ...
BSON.@save "./path/to/trained_model.bson" model
end
# is equivalent to the above, but uses `key=value` storing directive from BSON.jl
BSON.@save "./path/to/trained_model.bson" model = cpu(model)
The reason behind this is that models trained in the GPU but not transferred to the CPU memory scope will expect CuArray
s as input. In other words, Flux models expect input data coming from the same kind device in which they were trained on.
In controlled scenarios in which the data fed to the loaded models is garanteed to be in the GPU there's no need to transfer them back to CPU memory scope, however in production environments, where artifacts are shared among different processes, equipments or configurations, there is no garantee that the CUDA.jl package will be available for the process performing inference on the model loaded from the disk.
Disabling CUDA or choosing which GPUs are visible to Flux
Sometimes it is required to control which GPUs are visible to julia
on a system with multiple GPUs or disable GPUs entirely. This can be achieved with an environment variable CUDA_VISIBLE_DEVICES
.
To disable all devices:
$ export CUDA_VISIBLE_DEVICES='-1'
To select specific devices by device id:
$ export CUDA_VISIBLE_DEVICES='0,1'
More information for conditional use of GPUs in CUDA.jl can be found in its documentation, and information about the specific use of the variable is described in the Nvidia CUDA blog post.
Data movement across GPU devices
Flux also supports getting handles to specific GPU devices, and transferring models from one GPU device to another GPU device from the same backend. Let's try it out for NVIDIA GPUs. First, we list all the available devices:
julia> using Flux, CUDA;
julia> CUDA.devices()
CUDA.DeviceIterator() for 3 devices:
0. NVIDIA TITAN RTX
1. NVIDIA TITAN RTX
2. NVIDIA TITAN RTX
Then, let's select the device with id 0
:
julia> device0 = gpu_device(1)
(::CUDADevice{CuDevice}) (generic function with 4 methods)
julia> device0.device
CuDevice(0): NVIDIA TITAN RTX
Notice that indexing starts from 0
in the CUDA.devices()
output, but gpu_device!
expects the device id starting from 1
.
Then, let's move a simple dense layer to the GPU represented by device0
:
julia> dense_model = Dense(2 => 3)
Dense(2 => 3) # 9 parameters
julia> dense_model = dense_model |> device0;
julia> dense_model.weight
3×2 CuArray{Float32, 2, CUDA.DeviceMemory}:
-0.142062 -0.131455
-0.828134 -1.06552
0.608595 -1.05375
julia> CUDA.device(dense_model.weight) # check the GPU to which dense_model is attached
CuDevice(0): NVIDIA TITAN RTX
Next, we'll get a handle to the device with id 1
, and move dense_model
to that device:
julia> device1 = gpu_device(2)
(::CUDADevice{CuDevice}) (generic function with 4 methods)
julia> dense_model = dense_model |> device1; # don't directly print the model; see warning below
julia> CUDA.device(dense_model.weight)
CuDevice(1): NVIDIA TITAN RTX
Due to a limitation in Metal.jl
, currently this kind of data movement across devices is only supported for CUDA
and AMDGPU
backends.
Distributed data parallel training
Distributed support is experimental and could change in the future.
Flux supports now distributed data parallel training with DistributedUtils
module. If you want to run your code on multiple GPUs, you have to install MPI.jl
(see docs for more info).
julia> using MPI
julia> MPI.install_mpiexecjl()
Now you can run your code with mpiexecjl --project=. -n <np> julia <filename>.jl
from CLI.
You can use either the MPIBackend
or NCCLBackend
, the latter only if also NCCL.jl
is loaded. First, initialize a backend with DistributedUtils.initialize
, e.g.
julia> using Flux, MPI, NCCL, CUDA
julia> CUDA.allowscalar(false)
julia> DistributedUtils.initialize(NCCLBackend)
julia> backend = DistributedUtils.get_distributed_backend(NCCLBackend)
NCCLBackend{Communicator, MPIBackend{MPI.Comm}}(Communicator(Ptr{NCCL.LibNCCL.ncclComm} @0x000000000607a660), MPIBackend{MPI.Comm}(MPI.Comm(1140850688)))
Pass your model, as well as any data to GPU device.
julia> model = Chain(Dense(1 => 256, tanh), Dense(256 => 1)) |> gpu
Chain(
Dense(1 => 256, tanh), # 512 parameters
Dense(256 => 1), # 257 parameters
) # Total: 4 arrays, 769 parameters, 744 bytes.
julia> x = rand(Float32, 1, 16) |> gpu
1×16 CUDA.CuArray{Float32, 2, CUDA.DeviceMemory}:
0.239324 0.331029 0.924996 0.55593 0.853093 0.874513 0.810269 0.935858 0.477176 0.564591 0.678907 0.729682 0.96809 0.115833 0.66191 0.75822
julia> y = x .^ 3
1×16 CUDA.CuArray{Float32, 2, CUDA.DeviceMemory}:
0.0137076 0.0362744 0.791443 0.171815 0.620854 0.668804 0.53197 0.819654 0.108651 0.179971 0.312918 0.388508 0.907292 0.00155418 0.29 0.435899
In this case, we are training on a total of 16 * number of processes
samples. You can also use DistributedUtils.DistributedDataContainer
to split the data uniformly across processes (or do it manually).
julia> data = DistributedUtils.DistributedDataContainer(backend, x)
Flux.DistributedUtils.DistributedDataContainer(Float32[0.23932439 0.33102947 … 0.66191036 0.75822026], [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16])
You have to wrap your model in DistributedUtils.FluxDistributedModel
and synchronize it (broadcast accross all processes):
julia> model = DistributedUtils.synchronize!!(backend, DistributedUtils.FluxDistributedModel(model); root=0)
Chain(
Dense(1 => 256, tanh), # 512 parameters
Dense(256 => 1), # 257 parameters
) # Total: 4 arrays, 769 parameters, 744 bytes.
Time to set up an optimizer by using DistributedUtils.DistributedOptimizer
and synchronize it as well.
julia> using Optimisers
julia> opt = DistributedUtils.DistributedOptimizer(backend, Optimisers.Adam(0.001f0))
DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8))
julia> st_opt = Optimisers.setup(opt, model)
(layers = ((weight = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0; 0.0; … ; 0.0; 0.0;;], Float32[0.0; 0.0; … ; 0.0; 0.0;;], (0.9, 0.999))), bias = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 … 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], Float32[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 … 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], (0.9, 0.999))), σ = ()), (weight = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0 0.0 … 0.0 0.0], Float32[0.0 0.0 … 0.0 0.0], (0.9, 0.999))), bias = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0], Float32[0.0], (0.9, 0.999))), σ = ())),)
julia> st_opt = DistributedUtils.synchronize!!(backend, st_opt; root=0)
(layers = ((weight = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0; 0.0; … ; 0.0; 0.0;;], Float32[0.0; 0.0; … ; 0.0; 0.0;;], (0.9, 0.999))), bias = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 … 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], Float32[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 … 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], (0.9, 0.999))), σ = ()), (weight = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0 0.0 … 0.0 0.0], Float32[0.0 0.0 … 0.0 0.0], (0.9, 0.999))), bias = Leaf(DistributedOptimizer{MPIBackend{Comm}}(MPIBackend{Comm}(Comm(1140850688)), Adam(0.001, (0.9, 0.999), 1.0e-8)), (Float32[0.0], Float32[0.0], (0.9, 0.999))), σ = ())),)
Now you can define loss and train the model.
julia> loss(model) = mean((model(x) .- y).^2)
loss (generic function with 1 method)
julia> for epoch in 1:100
global model, st_opt
l, grad = Zygote.withgradient(loss, model)
println("Epoch $epoch: Loss $l")
st_opt, model = Optimisers.update(st_opt, model, grad[1])
end
Epoch 1: Loss 0.011638729
Epoch 2: Loss 0.0116432225
Epoch 3: Loss 0.012763695
...
Remember that in order to run it on multiple GPUs you have to run from CLI mpiexecjl --project=. -n <np> julia <filename>.jl
, where <np>
is the number of processes that you want to use. The number of processes usually corresponds to the number of gpus.
By default MPI.jl
MPI installation is CUDA-unaware so if you want to run it in CUDA-aware mode, read more here on custom installation and rebuilding MPI.jl
. Then test if your MPI is CUDA-aware by
julia> import Pkg
julia> Pkg.test("MPI"; test_args=["--backend=CUDA"])
If it is, set your local preference as below
julia> using Preferences
julia> set_preferences!("Flux", "FluxDistributedMPICUDAAware" => true)
We don't run CUDA-aware tests so you're running it at own risk.
Checking GPU Availability
By default, Flux will run the checks on your system to see if it can support GPU functionality. You can check if Flux identified a valid GPU setup by typing the following:
julia> using CUDA
julia> CUDA.functional()
true
For AMD GPU:
julia> using AMDGPU
julia> AMDGPU.functional()
true
julia> AMDGPU.functional(:MIOpen)
true
For Metal GPU:
julia> using Metal
julia> Metal.functional()
true